# SeroVerse

> Unified computational ecosystem and zero-copy SoA core for bacterial surface polysaccharide genomics, structural glycomics, and Bayesian sero-epidemiology

SeroVerse: Unified computational ecosystem for bacterial surface polysaccharide genomics (SeroRef), structural glycomics (KBank), geno-glycomic biosynthesis (SeroGen), and Bayesian sero-epidemiology (SeroEpi), powered by the seroverse.core Structure-of-Arrays (SoA) engine and seroverse.client rate-limited API clients.

## Overview & Architecture

- [Home](<https://seroverse.github.io/SeroVerse/index.md>): SeroVerse Ecosystem Home, Four Pillars, End-to-End Architecture, Unified Quickstart, and Installation
- [Architecture &amp; Core Engine](<https://seroverse.github.io/SeroVerse/architecture/index.md>): seroverse.core Structure-of-Arrays (SoA) containers, sequence/k-mer/alignment/clustering engines, CSR graphs & Relational MPNNs, and seroverse.client rate-limited repository clients

## API Reference

- [Overview](<https://seroverse.github.io/SeroVerse/reference/index.md>): Overview of seroverse.core and seroverse.client modules
- [seroverse.core](<https://seroverse.github.io/SeroVerse/reference/core/index.md>): seroverse.core: BatchedContainer, RaggedArrayContainer, Intervals, GenomeAssembly, Sequences, RandstrobeIndex, PairwiseAligner, Clusterer, GraphModel, GraphAligner, RelationalMPNN, and LayoutEngine
- [seroverse.client](<https://seroverse.github.io/SeroVerse/reference/client/index.md>): seroverse.client: Client, NCBIClient, ENAClient, BacDiveClient, StrainInfoClient, PathogenwatchBaseClient, and msgpack cassette utilities

## Community

- [Citation](<https://seroverse.github.io/SeroVerse/citation/index.md>): How to cite the SeroVerse ecosystem in academic publications
- [Code of Conduct](<https://seroverse.github.io/SeroVerse/conduct/index.md>): Contributor Covenant Code of Conduct
- [Contributing](<https://seroverse.github.io/SeroVerse/contributing/index.md>): Local development setup, testing, and pull request guidelines
- [Release Notes](<https://seroverse.github.io/SeroVerse/releases/index.md>): Version history and changelog across SeroVerse packages