API Reference¶
The SeroRef API is organized into three modules:
seroref.genes— Single-pass bacterial & prophage ORF calling (OrfPredictor), functional role ontology (GeneRole,RoleSpec,RoleSpecs), and multi-scale 1D-CNN protein classification (GeneRoleClassifier).seroref.loci— Biosynthetic locus archetypes (LocusArchetype,ArchetypeCategory,ArchetypeSpec,ArchetypeSpecs), ACP-DP locus segmentation (LocusSegmenter), high-level locus prediction (LocusPredictor), and serotype matching (LocusMatcher).seroref.db— Species ontology (BacterialSpecies,SpeciesSpec,SpeciesSpecs), deduplicated reference strain isolates (ReferenceStrain,ReferenceStrains), and relational reference locus records (SeroRefRecord,SeroRefRecords).